Various notebooks, slides, resources, and tutorials from some of my projects.
Getting started with the Brain Imaging Data Structure (BIDS), fMRIPrep, MRIQC
Slides: The Brain Imaging Data Structure (BIDS) Ecosystem and fMRIPrep presentation from UA Brain Mapping Workgroup meeting 02/17/2020
Slides: Intro to using BIDS/dcm2niix and fMRIPrep presentation from UA Brain Mapping Workgroup meeting 11/16/2018
Drawing a CONSORT diagram with ggplot2 (based on this tutorial)
Statistics and R
Checking model assumptions without getting paranoid
(& see also Checking model assumptions? Look at the residuals, not the raw data)
Common statistical tests are linear models
Learning Statistics with R
R best practices
Visualizing hierarchical (aka multilevel or mixed) models